DREAMS: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection, Genome Biology
Por um escritor misterioso
Last updated 21 maio 2024
Circulating tumor DNA detection using next-generation sequencing (NGS) data of plasma DNA is promising for cancer identification and characterization. However, the tumor signal in the blood is often low and difficult to distinguish from errors. We present DREAMS (Deep Read-level Modelling of Sequencing-errors) for estimating error rates of individual read positions. Using DREAMS, we develop statistical methods for variant calling (DREAMS-vc) and cancer detection (DREAMS-cc). For evaluation, we generate deep targeted NGS data of matching tumor and plasma DNA from 85 colorectal cancer patients. The DREAMS approach performs better than state-of-the-art methods for variant calling and cancer detection.
Multimodal analysis of cell-free DNA whole-genome sequencing for
Systematic evaluation of error rates and causes in short samples
Genes, Free Full-Text
The challenge of somatic variant detection accuracy in liquid
Evaluating the performance of low-frequency variant calling tools
DREAMS: deep read-level error model for sequencing data applied to
Genes, Free Full-Text
Bioinformatic strategies for the analysis of genomic aberrations
Variant calling in control data. (a) Power (true-positive rate) of
Ultra-deep sequencing data from a liquid biopsy proficiency study
DREAMS: Deep Read-level Error Model for Sequencing data applied to
PDF) DREAMS: deep read-level error model for sequencing data
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